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Umit Topaloglu PhD

TitleAssociate Professor
InstitutionWake Forest School of Medicine
DepartmentCancer Biology
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    Other Positions
    TitleAssociate Professor
    InstitutionWake Forest School of Medicine
    DepartmentPHS-Biostatistics and Data Science (Public Health Sciences)

    TitleAssociate Director
    InstitutionWake Forest School of Medicine
    DepartmentCenter for Biomedical Informatics (CBMI)


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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Faculty can login to make corrections and additions.
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    PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Diaz-Garelli JF, Strowd R, Wells BJ, Ahmed T, Merrill R, Topaloglu U. Lost in Translation: Diagnosis Records Show More Inaccuracies After Biopsy in Oncology Care EHRs. AMIA Jt Summits Transl Sci Proc. 2019; 2019:325-334. PMID: 31258985.
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    2. Song Q, Hawkins GA, Wudel L, Chou PC, Forbes E, Pullikuth AK, Liu L, Jin G, Craddock L, Topaloglu U, Kucera G, O'Neill S, Levine EA, Sun P, Watabe K, Lu Y, Alexander-Miller MA, Pasche B, Miller LD, Zhang W. Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq. Cancer Med. 2019 06; 8(6):3072-3085. PMID: 31033233.
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    3. Guan M, Cho S, Petro R, Zhang W, Pasche B, Topaloglu U. Natural language processing and recurrent network models for identifying genomic mutation-associated cancer treatment change from patient progress notes. JAMIA Open. 2019 Apr; 2(1):139-149. PMID: 30944913.
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    4. Topaloglu U, Palchuk MB. Using a Federated Network of Real-World Data to Optimize Clinical Trials Operations. JCO Clin Cancer Inform. 2018 12; 2:1-10. PMID: 30652541.
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    5. Xiao TG, Weis JA, Gayzik FS, Thomas A, Chiba A, Gurcan MN, Topaloglu U, Samykutty A, McNally LR. Applying dynamic contrast enhanced MSOT imaging to intratumoral pharmacokinetic modeling. Photoacoustics. 2018 Sep; 11:28-35. PMID: 30105204.
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    6. Diaz-Garelli JF, Wells BJ, Yelton C, Strowd R, Topaloglu U. Biopsy Records Do Not Reduce Diagnosis Variability in Cancer Patient EHRs: Are We More Uncertain After Knowing? AMIA Jt Summits Transl Sci Proc. 2018; 2017:72-80. PMID: 29888044.
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    7. Mancone S, Lycan T, Ahmed T, Topaloglu U, Dothard A, Petty WJ, Strowd RE. Severe neurologic complications of immune checkpoint inhibitors: a single-center review. J Neurol. 2018 Jul; 265(7):1636-1642. PMID: 29761297.
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    8. Liu L, Ruiz J, O'Neill SS, Grant SC, Petty WJ, Yang M, Chen K, Topaloglu U, Pasche B, Zhang W. Favorable outcome of patients with lung adenocarcinoma harboring POLE mutations and expressing high PD-L1. Mol Cancer. 2018 04 12; 17(1):81. PMID: 29650000.
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    9. Yang M, Forbes ME, Bitting RL, O'Neill SS, Chou PC, Topaloglu U, Miller LD, Hawkins GA, Grant SC, DeYoung BR, Petty WJ, Chen K, Pasche BC, Zhang W. Incorporating blood-based liquid biopsy information into cancer staging: time for a TNMB system? Ann Oncol. 2018 02 01; 29(2):311-323. PMID: 29216340.
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    10. Kytola V, Topaloglu U, Miller LD, Bitting RL, Goodman MM, D Agostino RB, Desnoyers RJ, Albright C, Yacoub G, Qasem SA, DeYoung B, Thorsson V, Shmulevich I, Yang M, Shcherban A, Pagni M, Liu L, Nykter M, Chen K, Hawkins GA, Grant SC, Petty WJ, Alistar AT, Levine EA, Staren ED, Langefeld CD, Miller V, Singal G, Petro RM, Robinson M, Blackstock W, Powell BL, Wagner LI, Foley KL, Abraham E, Pasche B, Zhang W. Mutational Landscapes of Smoking-Related Cancers in Caucasians and African Americans: Precision Oncology Perspectives at Wake Forest Baptist Comprehensive Cancer Center. Theranostics. 2017; 7(11):2914-2923. PMID: 28824725.
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    11. Alistar A, Morris BB, Desnoyer R, Klepin HD, Hosseinzadeh K, Clark C, Cameron A, Leyendecker J, D'Agostino R, Topaloglu U, Boteju LW, Boteju AR, Shorr R, Zachar Z, Bingham PM, Ahmed T, Crane S, Shah R, Migliano JJ, Pardee TS, Miller L, Hawkins G, Jin G, Zhang W, Pasche B. Safety and tolerability of the first-in-class agent CPI-613 in combination with modified FOLFIRINOX in patients with metastatic pancreatic cancer: a single-centre, open-label, dose-escalation, phase 1 trial. Lancet Oncol. 2017 06; 18(6):770-778. PMID: 28495639.
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    12. Yang M, Topaloglu U, Petty WJ, Pagni M, Foley KL, Grant SC, Robinson M, Bitting RL, Thomas A, Alistar AT, Desnoyers RJ, Goodman M, Albright C, Porosnicu M, Vatca M, Qasem SA, DeYoung B, Kytola V, Nykter M, Chen K, Levine EA, Staren ED, D'Agostino RB, Petro RM, Blackstock W, Powell BL, Abraham E, Pasche B, Zhang W. Circulating mutational portrait of cancer: manifestation of aggressive clonal events in both early and late stages. J Hematol Oncol. 2017 05 04; 10(1):100. PMID: 28472989.
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    13. Lencioni A, Hutchins L, Annis S, Chen W, Ermisoglu E, Feng Z, Mack K, Simpson K, Lane C, Topaloglu U. An adverse event capture and management system for cancer studies. BMC Bioinformatics. 2015; 16 Suppl 13:S6. PMID: 26424052.
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    14. Bian J, Xie M, Hogan W, Hutchins L, Topaloglu U, Lane C, Holland J, Wells T. CLARA: an integrated clinical research administration system. J Am Med Inform Assoc. 2014 Oct; 21(e2):e369-73. PMID: 24778201.
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    15. Hudson CL, Topaloglu U, Bian J, Hogan W, Kieber-Emmons T. Automated Tools for Clinical Research Data Quality Control using NCI Common Data Elements. AMIA Jt Summits Transl Sci Proc. 2014; 2014:60-9. PMID: 25717402.
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    16. Bian J, Xie M, Topaloglu U, Hudson T, Eswaran H, Hogan W. Social network analysis of biomedical research collaboration networks in a CTSA institution. J Biomed Inform. 2014 Dec; 52:130-40. PMID: 24560679.
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    17. Brochhausen M, Fransson MN, Kanaskar NV, Eriksson M, Merino-Martinez R, Hall RA, Norlin L, Kjellqvist S, Hortlund M, Topaloglu U, Hogan WR, Litton JE. Developing a semantically rich ontology for the biobank-administration domain. J Biomed Semantics. 2013 Oct 08; 4(1):23. PMID: 24103726.
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    18. Bian J, Xie M, Topaloglu U, Cisler JM. A probabilistic model of functional brain connectivity network for discovering novel biomarkers. AMIA Jt Summits Transl Sci Proc. 2013; 2013:21-5. PMID: 24303289.
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    19. Bian J, Topaloglu U, Yu F. Towards Large-scale Twitter Mining for Drug-related Adverse Events. SHB12 (2012). 2012 Oct 29; 2012:25-32. PMID: 28967001.
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    20. Yip V, Mete M, Topaloglu U, Kockara S. Concept Discovery for Pathology Reports using an N-gram Model. Summit Transl Bioinform. 2010 Mar 01; 2010:43-7. PMID: 21347147.
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    21. Mete M, Hennings L, Spencer HJ, Topaloglu U. Automatic identification of angiogenesis in double stained images of liver tissue. BMC Bioinformatics. 2009 Oct 08; 10 Suppl 11:S13. PMID: 19811678.
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    22. Bian J, Topaloglu U, Lane C. EIR: enterprise imaging repository, an alternative imaging archiving and communication system. Annu Int Conf IEEE Eng Med Biol Soc. 2009; 2009:2168-71. PMID: 19963537.
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